Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs60118041 chr17:35803252 G/A 4.33E-5 291 21.4 23.78 8.45 KM Plot
CESC rs60127199 chr10:7666426 T/C 1.63E-5 287 23.3 19.95 15.33 KM Plot
CESC rs60199476 chr3:129219925 G/A 4.92E-5 294 21.73 20.63 14.73 KM Plot
CESC rs60217618 chr1:59090121 T/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs60432757 chr10:88169360 T/TA 3.41E-14 291 3.33 23.02 21.17 KM Plot
CESC rs60544131 chr3:100358378 G/T 1.15E-5 297 22.4 19.3 12.05 KM Plot
CESC rs6060838 chr20:34755357 A/G 9.9E-6 297 23.07 21.73 6.47 KM Plot
CESC rs60689714 chr3:129213057 T/TG 4.92E-5 294 21.73 20.63 14.73 KM Plot
CESC rs60698357 chr1:59087973 T/C 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs60769312 chr16:67732186 C/T 5.63E-6 285 21.07 26.27 16.87 KM Plot
CESC rs60938133 chr3:100359676 T/G 1.15E-5 297 22.4 19.3 12.05 KM Plot
CESC rs61060445 chr3:129161424 A/AC 4.75E-5 295 21.47 20.95 14.73 KM Plot
CESC rs61070091 chr1:59087875 G/T 8.15E-8 294 21.23 25.63 11.13 KM Plot
CESC rs61229044 chr3:129162376 G/A 4.75E-5 295 21.47 20.95 14.73 KM Plot
CESC rs61549238 chr3:100309181 C/T 8.49E-6 293 21.57 20.07 12.05 KM Plot